.. hco_dev_docs documentation master file, created by
   sphinx-quickstart on Thu Feb 20 19:44:42 2020.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to Hippocampome.org's Developer Documentation!
======================================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:

.. toctree::
    :hidden:
    :caption: Database

    database/database

.. toctree::
    :hidden:
    :caption: Web Pages

    web_pages/web_pages
    web_pages/color_codes
    web_pages/adding_evidence_page
    
.. toctree::
    :hidden:
    :caption: Csv2db

    csv2db/tables_overview
    csv2db/add_table
    csv2db/string_field
    
.. toctree::
    :hidden:
    :caption: Synaptic Probabilities

    synaptic_probabilities/overview.md
    synaptic_probabilities/propagate_errors.md
    synaptic_probabilities/fragment.md
    synaptic_probabilities/json_files.md
    synaptic_probabilities/csv_dls.md
    synaptic_probabilities/probabilities_tool.md
    synaptic_probabilities/header_height.md
    
.. toctree::
    :hidden:
    :caption: Oscillatory Phases

    phases/phases.md

.. toctree::
    :hidden:
    :caption: Synaptome

    synaptome/synaptome.md

.. toctree::
    :hidden:
    :caption: CARLsim Developer Documentation

    csdevdocs/cstp.md
    csdevdocs/synaptic_signal_decay.md

.. toctree::
    :hidden:
    :caption: Spatial Navigation Simulation

    spatial_nav/overview.md
    spatial_nav/initial_run.md
    spatial_nav/new_carlsim_project.md
    spatial_nav/building_required_files.md
    spatial_nav/project_settings_examples.md
    spatial_nav/connectivity_designing.md
    spatial_nav/movement_paths.md
    spatial_nav/field_wrapping.md
    spatial_nav/pattern_rotations.md
    spatial_nav/plotting_results.md
    spatial_nav/speed_convert.md
    spatial_nav/firing_rate_control.md
    spatial_nav/change_network_size.md
    spatial_nav/moves_converter.md
    spatial_nav/speed_control.md
    spatial_nav/param_explore_iz_fp.md
    spatial_nav/param_explore_iz_or_tm.md
    spatial_nav/param_explore_plotting.md
    spatial_nav/system_specs.md
    spatial_nav/additional_future_work.md

.. toctree::
    :hidden:
    :caption: Grid Cell Metrics

    gridcell_metrics/overview.md
    gridcell_metrics/usage_instruct.md
    gridcell_metrics/orientation_angles.md
    gridcell_metrics/config_options.md
    gridcell_metrics/metric_results.md
    gridcell_metrics/recreating_results.md
    gridcell_metrics/performance_tests.md

.. toctree::
    :hidden:
    :caption: Pattern Completion and Separation

    pattern_comp_sep/overview.md
    pattern_comp_sep/results_recreation.md
    pattern_comp_sep/simulation_run.md

.. toctree::
    :hidden:
    :caption: Object-Location Memory

    oblomem/overview.md
    oblomem/introduction.md
    oblomem/prog_design.md
    oblomem/carlsim_installation.md
    oblomem/new_projects.md
    oblomem/example_bashrc.md
    oblomem/create_train_pat.md
    oblomem/plotting.md
    oblomem/full_scale.md
    oblomem/non-context-cells_exp.md
    oblomem/context-cells_exp.md
    oblomem/general_comp.md
    oblomem/general_notes.md
    oblomem/general_utils.md
    oblomem/updateNM4levels.md
    oblomem/presyn_cent_stdp.md
    oblomem/nm4cstp.md
    oblomem/lateral_inhibition.md
    oblomem/stdp_analyses.md

.. toctree::
    :hidden:
    :caption: Editing Dev Docs

    editing/general_editing
    editing/stack_edit
    
.. toctree::
    :hidden:
    :caption: Adding New and On-hold Types

    new_types/adding_on-hold_types.md
    new_types/adding_new_types.md

Documentation In General
========================
This site will be used for recording methods for working on development on the site.

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`