Overview of Synaptic Probabilities Software

The following instructions describe the general process to rebuild or update synapic probabilities materials.

Rebuilding or Updating

If a prior version of the Synaptic Probabilities database tables exists, backup that before adding new material to reference the original material for comparison. For example, export a hippocampome database with the synaptic probabilities tables. Optionally, an extra copy of that exported database can be made with a name such as hippocampome2. This can help with comparing new table content created by rebuilding the tables with the material in the prior tables.

Data in the Project

In general, the data exists as values in the database, matrix values in json, evidence records, csv downloadable files, and a synaptic probabilities tool on the site.

Synaptic Probabilities Statistical Values

Instructions for building statistical values in the database are in Synaptic Probabilities Calculations page in this documentation. These tables require data from the tables neurite_quantified, number_of_contacts, and table based on the SynproParcelVolumes.csv file in the prop_error directory. The csv files created are for the tables SynproCP, SynproCPTotal, SynproNOC, SynproNOCTotal, SynproNoPS, SynproNoPSTotal, and SynproPairsOrder.

Evidence Tables

Instructions for building evidence record related tables are in the Synaptic Probabilities Evidence page in this documentation.

Other Data

The additional pages Json Files, CSV Downloads, Probabilities Tool, and Matrix Header Height describe additional resources.