Synaptic Probabilities Tool

Keeing tool up-to-date

If any changes are made to the number_of_contacts table, build_error_prop.sh should be run to regenerate SynproNOCR.csv. The database should then be rebuild with the new SynproNOCR.csv. The SynproNOCR.csv file is a reformatted number_of_contacts file that provides one row for each subregion and layer of a neuron pair. This is helpful for retrieving which subregions and layers are relevant to each neuron pair for use in this tool.

Purpose

The tool allows for setting custom values for synaptic probabilities calculations.

Code

The code for the tool is in the connprob.php file.

Results generation

The results are live generated through use of the neurite_quantified and NOCR tables.