HCO Dev Docs

Database

  • Handling updates

Web Pages

  • General site page programming
  • Color and keyword codes
  • Adding a new page for evidence

Csv2db

  • Csv2db database tables overview
  • Adding a new table instructions
  • String field files

Synaptic Probabilities

  • Overview of Synaptic Probabilities Software
  • Synaptic Probabilities Calculations
  • Synaptic Probabilities Evidence
  • Synaptic Probabilities Json Files
  • Synaptic Probabilities CSV Downloads
  • Synaptic Probabilities Tool
  • NbyN Matrices Header Height Increase

Oscillatory Phases

  • In Vivo Recordings Oscillatory Phases

Synaptome

  • Synaptome

CARLsim Developer Documentation

  • CARLsim Developer Documentation - CSTP
  • CARLsim Developer Documentation - Synaptic Signal Decay

Spatial Navigation Simulation

  • Overview of the Spatial Navigation Software
  • Initial run instructions
  • New CARLsim project creation
  • Building required files
  • Project settings examples
  • Connectivity and synapse weight design methods
  • Movement paths
  • Grid field plot border wrapping
  • Grid pattern rotation methods
  • Plotting and analyzing results
  • Speed conversions
  • Firing rate control
  • Methods to change the size of neural layers
  • Converting animal recordings data for simulation use
  • Automated speed control
  • Izhikevich model parameter exploration testing firing patterns
  • Izhikevich or Tsodyks-Markram model parameter exploration
  • Parameter exploration plotting
  • Computer system specifications
  • Additional Possible Future Work

Grid Cell Metrics

  • Grid Cell Metrics Measurement Methods
  • Example Usage Instructions
  • Orientation Angle Options
  • Configuration Options
  • Metric Results File
  • Recreating (R. G. et al., 2024) Results
  • GridMet Performance Tests

Pattern Completion and Separation

  • Pattern Completion and Separation Simulations
  • Results Recreation
  • Simulation Running

Object-Location Memory

  • Object-Location Memory Simulations
  • Introduction to Oblomem
  • General Programming Design
  • CARLsim6 Installation
  • Project Creation, Installation, and Running
  • Example .bashrc File
  • Training Pattern Files Creation
  • Creating Plots
  • Full Scale Experiment
  • Experiment Components in Non-context-cells Simulations
  • Experiment Components in Context-cells Simulations
  • General Experiment Components
  • General Notes
  • General Utilities
  • updateNM4Levels Development Documentation
  • Presynaptic Centered STDP Development Documentation
  • nm4cstp Development Documentation
  • Lateral Inhibition
  • STDP Analyses Methods

Editing Dev Docs

  • General editing
  • StackEdit Example
  • Welcome to StackEdit!
  • Files
  • Synchronization
  • Publication
  • Markdown extensions

Adding New and On-hold Types

  • Adding on-hold neuron types
  • Adding new neuron types
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